somavar/align (sha256:a9eaf77ba9fc08895cfe7363e141aabb2092995b15340aec4933b8be7cf5cd78)
Published 2026-08-27 18:54:55 +03:00 by glitch
Installation
docker pull git.zfamilyhub.ru/glitch/somavar/align@sha256:a9eaf77ba9fc08895cfe7363e141aabb2092995b15340aec4933b8be7cf5cd78sha256:a9eaf77ba9fc08895cfe7363e141aabb2092995b15340aec4933b8be7cf5cd78About this package
Read alignment: bwa mem | samtools view/sort/index
Image layers
| ADD file:d13afefcc2b0b02b598a3ac2598fe2187db41de1e17820e5b600a955b1429d59 in / |
| CMD ["bash"] |
| ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 |
| ENV ENV_NAME=base |
| ENV MAMBA_ROOT_PREFIX=/opt/conda |
| ENV MAMBA_EXE=/bin/micromamba |
| COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit |
| COPY /tmp/bin/micromamba /bin/micromamba # buildkit |
| RUN /bin/sh -c { grep -q '^ID=alpine$' /etc/os-release && apk add --no-cache bash; } || true # buildkit |
| ARG MAMBA_USER=mambauser |
| ARG MAMBA_USER_ID=57439 |
| ARG MAMBA_USER_GID=57439 |
| ENV MAMBA_USER=mambauser |
| ENV MAMBA_USER_ID=57439 |
| ENV MAMBA_USER_GID=57439 |
| COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit |
| COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit |
| RUN |3 MAMBA_USER=mambauser MAMBA_USER_ID=57439 MAMBA_USER_GID=57439 /bin/sh -c /usr/local/bin/_dockerfile_initialize_user_accounts.sh && /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit |
| USER mambauser |
| WORKDIR /tmp |
| COPY _apptainer_shell.sh /usr/local/bin/_apptainer_shell.sh # buildkit |
| COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit |
| COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit |
| ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"] |
| CMD ["/bin/bash"] |
| COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit |
| SHELL [/usr/local/bin/_dockerfile_shell.sh] |
| ARG BWA_VERSION=0.7.18 |
| ARG SAMTOOLS_VERSION=1.21 |
| LABEL org.opencontainers.image.title=align (bwa + samtools) org.opencontainers.image.description=Read alignment: bwa mem | samtools view/sort/index |
| USER root |
| RUN |2 BWA_VERSION=0.7.18 SAMTOOLS_VERSION=1.21 /usr/local/bin/_dockerfile_shell.sh micromamba install -y -n base -c bioconda -c conda-forge bwa=${BWA_VERSION} samtools=${SAMTOOLS_VERSION} && micromamba clean --all --yes # buildkit |
| ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin |
| RUN |2 BWA_VERSION=0.7.18 SAMTOOLS_VERSION=1.21 /usr/local/bin/_dockerfile_shell.sh printf 'export PATH=/opt/conda/bin:$PATH\n' > /etc/profile.d/00-conda-path.sh # buildkit |
| WORKDIR /work |
| USER mambauser |
Labels
| Key | Value |
|---|---|
| org.opencontainers.image.created | 2024-09-23T16:05:37.063Z |
| org.opencontainers.image.description | Read alignment: bwa mem | samtools view/sort/index |
| org.opencontainers.image.licenses | Apache-2.0 |
| org.opencontainers.image.revision | 37bfa82a0fc1d2085e4b722fac4f747d0fa132c5 |
| org.opencontainers.image.source | https://github.com/mamba-org/micromamba-docker |
| org.opencontainers.image.title | align (bwa + samtools) |
| org.opencontainers.image.url | https://github.com/mamba-org/micromamba-docker |
| org.opencontainers.image.version | latest |